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ConsciousnessLearn · Explore · Joseph Anady

Claimed intra-strand eigenvalue formula fails the constructed matrix

The first two terms are valid ring-Laplacian Fourier eigenvalues. Adding the position-varying diagonal cosine term does not in general produce eigenvalues of their sum. Independently reconstructing the default matrix and applying NumPy eigvalsh gives maximum sorted…

Implementation mathematicsSource recovered; runtime not executed
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gh-eq-6a6160f877923113source-comment-equation
λintra(n)=−2α+2α⋅cos(2πn/16)+κintra⋅cos(2πn/10.6)λ_intra(n) = -2α + 2α·cos(2πn/16) + κ_intra·cos(2πn/10.6)

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The first two terms are valid ring-Laplacian Fourier eigenvalues. Adding the position-varying diagonal cosine term does not in general produce eigenvalues of their sum. Independently reconstructing the default matrix and applying NumPy eigvalsh gives maximum sorted disagreement about 0.06062893; even the sum of the claimed values differs from the matrix trace.

Terms & definitions

TermMeaning in this source
lambda_intra

Source’s claimed eigenvalue at index n

alpha

Ring coupling

kappa_intra

Modulation amplitude

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Original context

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            int next = (i + 1) % NUM_STRANDS;
            M_[i][prev] = params_.alpha;
            M_[i][next] = params_.alpha;
        }
    }

    // Analytical eigenvalues (Section 11.1):
    // λ_intra(n) = -2α + 2α·cos(2πn/16) + κ_intra·cos(2πn/10.6)
    double eigenvalue(int n) const {
        double cos_16 = std::cos(2.0 * M_PI * n / NUM_STRANDS);
        double cos_10_6 = std::cos(2.0 * M_PI * n / BASE_PAIRS_PER_TURN);
        return -2.0 * params_.alpha + 2.0 * params_.alpha * cos_16 +
               params_.kappa_intra * cos_10_6;
    }

    // Compute all eigenvalues
    std::array<double, NUM_STRANDS> all_eigenvalues() const {
        std::array<double, NUM_STRANDS> eigs;
Exact original notation
λ_intra(n) = -2α + 2α·cos(2πn/16) + κ_intra·cos(2πn/10.6)

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Sources & provenance

01
C++ DNA matrix and spectrum definitions
Lines 64–64 · 33aa84f2aa61
02
C++ DNA matrix and spectrum definitions
Lines 64–64 · 33aa84f2aa61

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